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RNA Pattern Matcher
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Additional information
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Query Name:
(Optional)
e-mail:
(Optional)
Query Sequence:
FASTA sequence representation
Query Structure:
Base pairing rules:
Watson-Crick base pairs with wobbling G-U:
Matrix score = amount of G-U pairs in the match
Watson-Crick base pairs:
Matrix score = 0
User-defined pairing:
create a custom base pairing matrix
Base pairing matrix:
Set -1 for illegal base pairs
A
C
G
U
A
C
G
U
Target File:
By file
By Accession number
Accession number:
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Examples:
Queries:
Guanine-binding riboswitch aptamer
Hairpin with high G-C stem
Set
Targets:
Bacillus subtilis
guanine-binding riboswitch
Thermoanaerobacter tengcongensis
Full genome (2.6MB)
Set
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